// @(#)root/mlp:$Id$ // Author: Christophe.Delaere@cern.ch 20/07/03 /************************************************************************* * Copyright (C) 1995-2003, Rene Brun and Fons Rademakers. * * All rights reserved. * * * * For the licensing terms see $ROOTSYS/LICENSE. * * For the list of contributors see $ROOTSYS/README/CREDITS. * *************************************************************************/ /////////////////////////////////////////////////////////////////////////// // // TNeuron // // This class decribes an elementary neuron, which is the basic // element for a Neural Network. // A network is built connecting neurons by synapses. // There are different types of neurons: linear (a+bx), // sigmoid (1/(1+exp(-x)), tanh or gaussian. // An external function can also be used, together with its derivative. // In a Multi Layer Perceptron, the input layer is made of // inactive neurons (returning the normalized input) and output neurons // are linear. Hidden neurons may be anything, the default being sigmoids. // // This implementation contains several methods to compute the value, // the derivative, the DeDw, ... // Values are stored in local buffers. The SetNewEvent() method is // there to inform buffered values are outdated. // /////////////////////////////////////////////////////////////////////////// #include "TSynapse.h" #include "TNeuron.h" #include "TTree.h" #include "TTreeFormula.h" #include "TFormula.h" #include "TBranch.h" #include "TCanvas.h" #include "TROOT.h" #include "TH1D.h" #include "TRegexp.h" #include "TMath.h" #include "Riostream.h" ClassImp(TNeuron) //______________________________________________________________________________ TNeuron::TNeuron(TNeuron::ENeuronType type /*= kSigmoid*/, const char* name /*= ""*/, const char* title /*= ""*/, const char* extF /*= ""*/, const char* extD /*= ""*/ ) :TNamed(name, title) { // Usual constructor fpre.SetOwner(false); fpost.SetOwner(false); flayer.SetOwner(false); fWeight = 0.; fNorm[0] = 1.; fNorm[1] = 0.; fType = type; fNewInput = true; fNewValue = true; fNewDeriv = true; fNewDeDw = true; fFormula = 0; fDeDw = 0; fDEDw = 0; fValue = 0; fExtF = 0; fExtD = 0; fIndex = 0; fDerivative = 0; fInput = 0; if(fType==kExternal) { fExtF = (TFormula*)gROOT->FindObject(extF); fExtD = (TFormula*)gROOT->FindObject(extD); } } //______________________________________________________________________________ Double_t TNeuron::Sigmoid(Double_t x) const { // The Sigmoid. // Fast computation of the values of the sigmoid function. // Uses values of the function up to the seventh order // tabulated at 700 points. // Values were computed in long double precision (16 bytes, // precision to about 37 digits) on a hp computer. // Some values were checked with Mathematica. // Result should be correct to ~ 15 digits (about double // precision) // // From the mlpfit package (J.Schwindling 20-Jul-1999) static Double_t sigval[7000] = { -3.500000e+01, 6.30511676014698530e-16, 6.30511676014698130e-16, 3.15255838007348670e-16, 1.05085279335782620e-16, 2.62713198339455210e-17, 5.25426396678905190e-18, 8.75710661131491060e-19, 1.25101523018779380e-19, 1.56376903773461590e-20, 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2.27949837049987270e-19, -2.84937296312450620e-20, 3.450000e+01, 9.99999999999999000e-01, 1.03953801167021980e-15, -5.19769005835108810e-16, 1.73256335278368870e-16, -4.33140838195918600e-17, 8.66281676391822790e-18, -1.44380279398632340e-18, 2.06257541998031890e-19, -2.57821927497502700e-20, 3.460000e+01, 9.99999999999999110e-01, 9.40612890429909060e-16, -4.70306445214953640e-16, 1.56768815071650610e-16, -3.91922037679123620e-17, 7.83844075358235410e-18, -1.30640679226368620e-18, 1.86629541751943390e-19, -2.33286927189902040e-20, 3.470000e+01, 9.99999999999999110e-01, 8.51101739147944780e-16, -4.25550869573971700e-16, 1.41850289857990070e-16, -3.54625724644972780e-17, 7.09251449289935940e-18, -1.18208574881652830e-18, 1.68869392688066110e-19, -2.11086740860057180e-20, 3.480000e+01, 9.99999999999999220e-01, 7.70108700136545650e-16, -3.85054350068272230e-16, 1.28351450022757000e-16, -3.20878625056890530e-17, 6.41757250113773230e-18, -1.06959541685626230e-18, 1.52799345265172830e-19, -1.90999181581443530e-20, 3.490000e+01, 9.99999999999999330e-01, 6.96823167838575130e-16, -3.48411583919287070e-16, 1.16137194639762020e-16, -2.90342986599403450e-17, 5.80685973198800470e-18, -9.67809955331312550e-19, 1.38258565047323660e-19, -1.72823206309143410e-20 }; Int_t i = (Int_t)(10*x+350.5); if(i<0) return TMath::Exp(x); if(i>699) return 1; Double_t* basePoint = sigval+(10*i); Double_t res = x - basePoint[0]; res = basePoint[1] + res * ( basePoint[2] + res * ( basePoint[3] + res * ( basePoint[4] + res * ( basePoint[5] + res * ( basePoint[6] + res * ( basePoint[7] + res * ( basePoint[8] ))))))); /* if(x<-15) return TMath::Exp(x); if(x> 15) return 1; return (1/(1+TMath::Exp(-x))); */ return res; } //______________________________________________________________________________ Double_t TNeuron::DSigmoid(Double_t x) const { // The Derivative of the Sigmoid. //if (x>2.1972246) return x/(1+TMath::Exp(x)); //Double_t a = Sigmoid(x); //return a-a*a; if (TMath::Abs(x) > 5) return TMath::Exp(-TMath::Abs(x)); Double_t expmx = TMath::Exp(-x); return expmx / ((1 + expmx) * (1 + expmx)); } //______________________________________________________________________________ void TNeuron::AddPre(TSynapse * pre) { // Adds a synapse to the neuron as an input // This method is used by the TSynapse while // connecting two neurons. fpre.AddLast(pre); if (fpre.GetEntriesFast() == fpre.GetSize()) fpre.Expand(2 * fpre.GetSize()); } //______________________________________________________________________________ void TNeuron::AddPost(TSynapse * post) { // Adds a synapse to the neuron as an output // This method is used by the TSynapse while // connecting two neurons. fpost.AddLast(post); if (fpost.GetEntriesFast() == fpost.GetSize()) fpost.Expand(2 * fpost.GetSize()); } //______________________________________________________________________________ void TNeuron::AddInLayer(TNeuron * nearP) { // Tells a neuron which neurons form its layer (including itself). // This is needed for self-normalizing functions, like Softmax. flayer.AddLast(nearP); if (flayer.GetEntriesFast() == flayer.GetSize()) flayer.Expand(2 * flayer.GetSize()); } //______________________________________________________________________________ TNeuron::ENeuronType TNeuron::GetType() const { // Returns the neuron type. return fType; } //______________________________________________________________________________ TTreeFormula* TNeuron::UseBranch(TTree* input, const char* formula) { // Sets a formula that can be used to make the neuron an input. // The formula is automatically normalized to mean=0, RMS=1. // This normalisation is used by GetValue() (input neurons) // and GetError() (output neurons) if (fFormula) delete fFormula; // Set the formula // One checks for {}: defined as instance in TMultiLayerPerceptron // so that EvalInstance can be used. This allows to use arrays as // input, also in complex calculation, without detailed string parsing. TRegexp re("{[0-9]+}$"); TString f(formula); Ssiz_t len = f.Length(); Ssiz_t pos = re.Index(f,&len); if(pos==-1 || len<3) fFormula = new TTreeFormula(Form("NF%lu",(ULong_t)this),formula,input); else { TString newformula(formula,pos); TString val = f(pos+1,len-2); fFormula = new TTreeFormula(Form("NF%lu",(ULong_t)this), (const char*) newformula,input); fIndex = val.Atoi(); f = newformula; } // Computes the default normalization TH1D tmp("tmpb", "tmpb", 1, -FLT_MAX, FLT_MAX); input->Draw(Form("%s>>tmpb",(const char*)f),"","goff"); fNorm[0] = tmp.GetRMS(); if(fNorm[0]<1e-15) fNorm[0]=1.; fNorm[1] = tmp.GetMean(); // Check the dimensionality if(fFormula->GetNdata()>1 && fIndex==0) Warning("TNeuron::UseBranch()","all indices in arrays must be specified, otherwise the first element will be assumed."); return fFormula; } //______________________________________________________________________________ Double_t TNeuron::GetBranch() const { // Returns the formula value. Double_t branch = fFormula->EvalInstance(fIndex); if (TMath::IsNaN(branch)) branch = 0.; return branch; } //______________________________________________________________________________ Double_t TNeuron::GetInput() const { // Returns neuron input if (!fNewInput) { return fInput; } ((TNeuron*)this)->fNewInput = false; Double_t input = 0.0; Int_t nEntries = fpre.GetEntriesFast(); if (nEntries) { input = fWeight; for (Int_t i = 0; i < nEntries; i++) { TSynapse *preSynapse = (TSynapse*)fpre.UncheckedAt(i); input += preSynapse->GetValue(); } } return (((TNeuron*)this)->fInput = input); } //______________________________________________________________________________ Double_t TNeuron::GetValue() const { // Computes the output using the appropriate function and all // the weighted inputs, or uses the branch as input. // In that case, the branch normalisation is also used. if (!fNewValue) { return fValue; } ((TNeuron*)this)->fNewValue = false; Int_t nentries = fpre.GetEntriesFast(); if (!nentries) { Double_t branch = GetBranch(); return (((TNeuron*)this)->fValue = (branch - fNorm[1]) / fNorm[0]); } else { Double_t input = GetInput(); Double_t value = 0; switch (fType) { case TNeuron::kOff: { value = 0; break; } case TNeuron::kLinear: { value = input; break; } case TNeuron::kSigmoid: { value = Sigmoid(input); break; } case TNeuron::kTanh: { value = TMath::TanH(input); break; } case TNeuron::kGauss: { value = TMath::Exp(-input * input); break; } case TNeuron::kSoftmax: { Double_t normalization = 0.0; for (Int_t i = 0; i < flayer.GetEntriesFast(); i++) { // this is not very efficient, as the same normalization // is calculated once per neuron instead of just once normalization += TMath::Exp(((TNeuron*) flayer.UncheckedAt(i))->GetInput()); } if (normalization > 0.0) { // exp(a_k) / sum_k'[ exp(a_k') ] value = TMath::Exp(input) / normalization; } else { // all neurons have output = 0 ? value = 1.0 / flayer.GetEntriesFast(); } break; } case TNeuron::kExternal: { value = fExtF->Eval(input); break; } } return (((TNeuron*)this)->fValue = value); } } //______________________________________________________________________________ Double_t TNeuron::GetDerivative() const { // computes the derivative for the appropriate function // at the working point if (!fNewDeriv) return fDerivative; ((TNeuron*)this)->fNewDeriv = false; Int_t nentries = fpre.GetEntriesFast(); Double_t input = fWeight; for (Int_t i=0;iGetValue(); } Double_t derivative = 0; switch (fType) { case TNeuron::kOff: { derivative = 0; break; } case TNeuron::kLinear: { derivative = 1; break; } case TNeuron::kSigmoid: { derivative = DSigmoid(input); break; } case TNeuron::kTanh: { derivative = (1 - (TMath::TanH(input) * TMath::TanH(input))); break; } case TNeuron::kGauss: { derivative = (-2) * input * TMath::Exp(-input * input); break; } case TNeuron::kSoftmax: { // actually this is not the derivative, as the Softmax function needs // exp(activation) of all the neurons in the layer for the normalization. // it will be smartly taken care of in GetDeDw() derivative = GetValue(); break; } case TNeuron::kExternal: { derivative = fExtD->Eval(input); break; } } return (((TNeuron*)this)->fDerivative = derivative); } //______________________________________________________________________________ Double_t TNeuron::GetError() const { // Computes the error for output neurons. // Returns 0 for other neurons. if (!fpost.GetEntriesFast()) return (GetValue() - (GetBranch() - fNorm[1]) / fNorm[0]); return 0; } //______________________________________________________________________________ Double_t TNeuron::GetTarget() const { // Computes the normalized target pattern for output neurons. // Returns 0 for other neurons. if (!fpost.GetEntriesFast()) return ((GetBranch() - fNorm[1]) / fNorm[0]); return 0; } //______________________________________________________________________________ Double_t TNeuron::GetDeDw() const { // Computes the derivative of the error wrt the neuron weight. if (!fNewDeDw) return fDeDw; ((TNeuron*)this)->fNewDeDw = false; // Output units DeDw is just the error for these cases: // - linear output, with sum-of-squares error // - sigmoid output, with binary cross-entropy // - softmax output, with 1-of-c cross entropy Int_t nEntries = fpost.GetEntriesFast(); if (nEntries == 0) { // output neuron ((TNeuron*)this)->fDeDw = GetError(); } else { // hidden nuron ((TNeuron*)this)->fDeDw = 0.0; if (fType != TNeuron::kSoftmax) { // non-softmax for (Int_t i = 0; i < nEntries; i++) { TSynapse *postSynapse = (TSynapse*)fpost.UncheckedAt(i); ((TNeuron*)this)->fDeDw += postSynapse->GetWeight() * postSynapse->GetPost()->GetDeDw(); } } else { // softmax derivative can be taken care of correcting the forward weight for (Int_t i = 0; i < nEntries; i++) { TSynapse *postSynapse = (TSynapse*)fpost.UncheckedAt(i); ((TNeuron*)this)->fDeDw += (postSynapse->GetWeight() - postSynapse->GetPost()->GetInput()) * postSynapse->GetPost()->GetDeDw(); } } ((TNeuron*)this)->fDeDw *= GetDerivative(); } return fDeDw; } //______________________________________________________________________________ void TNeuron::ForceExternalValue(Double_t value) { // Uses the branch type to force an external value. fNewValue = false; fValue = (value - fNorm[1]) / fNorm[0]; } //______________________________________________________________________________ void TNeuron::SetNormalisation(Double_t mean, Double_t RMS) { // Sets the normalization variables. // Any input neuron will return (branch-mean)/RMS. // When UseBranch is called, mean and RMS are automatically set // to the actual branch mean and RMS. fNorm[0] = RMS; fNorm[1] = mean; } //______________________________________________________________________________ void TNeuron::SetWeight(Double_t w) { // Sets the neuron weight to w. // The neuron weight corresponds to the bias in the // linear combination of the inputs. fWeight = w; } //______________________________________________________________________________ void TNeuron::SetNewEvent() const { // Inform the neuron that inputs of the network have changed, // so that the buffered values have to be recomputed. ((TNeuron*)this)->fNewInput = true; ((TNeuron*)this)->fNewValue = true; ((TNeuron*)this)->fNewDeriv = true; ((TNeuron*)this)->fNewDeDw = true; } //______________________________________________________________________________ void TNeuron::SetDEDw(Double_t in) { // Sets the derivative of the total error wrt the neuron weight. fDEDw = in; }